CycloBranch
Publications

Publications to Cite

Jiri Novak, Lucie Sokolova, Karel Lemr, Tomas Pluhacek, Andrea Palyzova and Vladimir Havlicek.
Batch-processing of Imaging or Liquid-chromatography Mass Spectrometry Datasets and De Novo Sequencing of Polyketide Siderophores.
BBA - Proteins Proteom., vol. 1865, no. 7, pp. 768-775, 2017. DOI: 10.1016/j.bbapap.2016.12.003.
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Jiri Novak, Karel Lemr, Kevin A. Schug and Vladimir Havlicek.
CycloBranch: De Novo Sequencing of Nonribosomal Peptides from Accurate Product Ion Mass Spectra.
J. Am. Soc. Mass Spectrom., vol. 26, no. 10, pp. 1780-1786, 2015. DOI: 10.1007/s13361-015-1211-1.
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Related Publications

Dominika Luptakova, Tomas Pluhacek, Milos Petrik, Jiri Novak, Andrea Palyzova, Lucie Sokolova, Anton Skriba, Blanka Sediva, Karel Lemr and Vladimir Havlicek.
Non-invasive and Invasive Diagnoses of Aspergillosis in a Rat Model by Mass Spectrometry.
Scientific Reports, vol. 7, pp. 16523, 2017. DOI: 10.1038/s41598-017-16648-z.

Jiri Novak and Vladimir Havlicek.
Dereplication and Visualization of Fungal Siderophores by CycloBranch.
Mycoses, vol. 60, no. S2, pp. 200, 2017. DOI: 10.1111/myc.12674.

Tomas Pluhacek, Karel Lemr, Dipankar Ghosh, David Milde, Jiri Novak and Vladimir Havlicek.
Characterization of Microbial Siderophores by Mass Spectrometry.
Mass Spectrom. Rev., vol. 35, no. 1, pp. 35-47, 2016. DOI: 10.1002/mas.21461.

Jakub Prichystal, Kevin A. Schug, Karel Lemr, Jiri Novak and Vladimir Havlicek.
Structural Analysis of Natural Products.
Anal. Chem., vol. 88, no. 21, pp. 10338-10346, 2016. DOI: 10.1021/acs.analchem.6b02386.