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OPPK

 

Výstupy projektu

Publikace
Václavík J., Šot P., Vilhanová B., Pecháček J., Kuzma M. & Kačer P. (2013) Practical Aspects and Mechanism of Asymmetric Hydrogenation with Chiral Half-Sandwich Complexes. Molecules, 18(6), 6804-6828.
Beranová, J., Seydlová, G., Kozak, H., Benada, O., Fišer, R., Artemenko, A., … Kromka, A. (2014). Sensitivity of bacteria to diamond nanoparticles of various size differs in gram-positive and gram-negative cells. FEMS Microbiology Letters, 351(2), 179–186.
Kadek, A., Mrazek, H., Halada, P., Rey, M., Schriemer, D. C., & Man, P. (2014). Aspartic Protease Nepenthesin ‑ 1 as a Tool for Digestion in Hydrogen/Deuterium Exchange Mass Spectrometry. Analytical Chemistry, 86(9), 4287–4294.
Kadek, A., Tretyachenko, V., Mrazek, H., Ivanova, L., Halada, P., Rey, M., … Man, P. (2014). Expression and characterization of plant aspartic protease nepenthesin-1 from Nepenthes gracilis. Protein Expression and Purification, 95, 121–128.
Kopecka, M., Kosek, D., Kukacka, Z., Rezabkova, L., Man, P., Novak, P., … Obsilova, V. (2014). Role of the EF-hand-like motif in the 14-3-3 protein-mediated activation of yeast neutral trehalase Nth1. Journal of Biological Chemistry, 289(20), 13948–13961.
Šot, P., Vilhanová, B., Pecháček, J., Václavík, J., Zápal, J., Kuzma, M., & Kačer, P. (2014). The role of the aromatic ligand in the asymmetric transfer hydrogenation of the CN bond on Noyori’s chiral Ru catalysts. Tetrahedron Asymmetry, 25(18–19), 1346–1351.
Stranava, M., Martínková, M., Stiborová, M., Man, P., Kitanishi, K., Muchová, L., … Shimizu, T. (2014). Introduction of water into the heme distal side by Leu65 mutations of an oxygen sensor, YddV, generates verdoheme and carbon monoxide, exerting the heme oxygenase reaction. Journal of Inorganic Biochemistry, 140, 29–38.
Václavík, J., Šot, P., Pecháček, J., Vilhanová, B., Matuška, O., Kuzma, M., & Kačer, P. (2014). Experimental and theoretical perspectives of the noyori-ikariya asymmetric transfer hydrogenation of imines. Molecules, 19(6), 6987–7007.
Kuchar, L., Faltyskova, H., Krasny, L., Dobrovolny, R., Hulkova, H., Ledvinova, J., … Havlicek, V. (2015). Fabry disease: renal sphingolipid distribution in the α-Gal A knockout mouse model by mass spectrometric and immunohistochemical imaging. Analytical and Bioanalytical Chemistry, 407(8), 2283–2291.
Stodůlková, E., Císařová, I., Kolařík, M., Chudiččková, M., Novák, P., Man, P., … Flieger, M. (2015). Biologically active metabolites produced by the Basidiomycete Quambalaria cyanescens. PLoS ONE, 10(2), 2–13.
Pelantová, H., Bugáňová, M., Anýž, J., Železná, B., Maletínská, L., Novák, D., … Kuzma, M. (2015). Strategy for NMR metabolomic analysis of urine in mouse models of obesity- from sample collection to interpretation of acquired data. Journal of Pharmaceutical and Biomedical Analysis, 115, 225–235.
Kadek, A., Kavan, D., Felice, A. K. G., Ludwig, R., Halada, P., & Man, P. (2015). Structural insight into the calcium ion modulated interdomain electron transfer in cellobiose dehydrogenase. FEBS Letters, 589(11), 1194–1199.
Kukacka, Z., Rosulek, M., Strohalm, M., Kavan, D., & Novak, P. (2015). Mapping protein structural changes by quantitative cross-linking. Methods, 89, 112–120.
Ječmen, T., Ptáčková, R., Černá, V., Dračínská, H., Hodek, P., Stiborová, M., … Šulc, M. (2015). Photo-initiated crosslinking extends mapping of the protein-protein interface to membrane-embedded portions of cytochromes P450 2B4 and b5. Methods, 89, 128–137.
Boubakri, H., Seghezzi, N., Duchateau, M., Gominet, M., Kofro??ov??, O., Benada, O., … Pernodet, J. L. (2015). The absence of pupylation (prokaryotic ubiquitin-like protein modification) affects morphological and physiological differentiation in Streptomyces coelicolor. Journal of Bacteriology, 197(21), 3388–3399.
Buzgo, M., Greplová, J., Soural, M., Bezděková, D., Míčková, A., Kofroňová, O., … Amler, E. (2015). PVA immunonanofibers with controlled decay. Polymer (United Kingdom), 77, 387–398.
Pavlikova, N., Smetana, P., Halada, P., & Kovar, J. (2015). Effect of prolonged exposure to sublethal concentrations of DDT and DDE on protein expression in human pancreatic beta cells. Environmental Research, 142, 257–263.
Hernychová, L., Mrázek, H., Ivanova, L., Kukačka, Z., Chmelík, J., & Novák, P. (2015). recombinant expression, in vitro refolding and characterizing disulfide bonds of a mouse inhibitory C-type lectin-like receptor Nkrp1b. Physiological Research, 64(Villard 2011), S85–S93.
Kadeřávek, P., Zapletal, V., Fiala, R., Srb, P., Padrta, P., Přecechtělová, J. P., … Žídek, L. (2016). Spectral density mapping at multiple magnetic fields suitable for13C NMR relaxation studies. Journal of Magnetic Resonance, 266, 23–40.
Pelantová, H., Bártová, S., Anýž, J., Holubová, M., Železná, B., Maletínská, L., … Kuzma, M. (2016). Metabolomic profiling of urinary changes in mice with monosodium glutamate-induced obesity. Analytical and Bioanalytical Chemistry, 408(2), 567–578.
Pospíšilová, E., Kavan, D., Novák, P., & Chmelík, J. (2016). 1H,13C and15N resonance assignments of human DCL-1 (CD302) extracellular domain. Biomolecular NMR Assignments, 10(1), 189–192.
Vilhanová, B., Václavík, J., Šot, P., Pecháček, J., Zápal, J., Pažout, R., … Kačer, P. (2016). Enantioselective hydrogenation of cyclic imines catalysed by Noyori–Ikariya half-sandwich complexes and their analogues. Chem. Commun., 52(2), 362–365.
Kamenik, Z., Kadlcik, S., Radojevic, B., Jiraskova, P., Kuzma, M., Gazak, R., … Janata, J. (2016). Deacetylation of mycothiol-derived “waste product” triggers the last biosynthetic steps of lincosamide antibiotics. Chem. Sci., 7(1), 430–435.
Matyska Liskova, P., Fiser, R., Macek, P., Chmelik, J., Sykora, J., Bednarova, L., … Bumba, L. (2016). Probing the Ca 2+ -assisted π–π interaction during Ca 2+ -dependent protein folding. Soft Matter, 12(2), 531–541.
Halada, P., Brugger, D., Volc, J., Peterbauer, C. K., Leitner, C., & Haltrich, D. (2016). Oxidation of Phe454 in the Gating Segment Inactivates Trametes multicolor Pyranose Oxidase during Substrate Turnover. PLoS ONE, 11(2), 1–12.
Pompach, P., Benada, O., Rosulek, M., Darebná, P., Hausner, J., Ružička, V., … Novák, P. (2016). Protein Chips Compatible with MALDI Mass Spectrometry Prepared by Ambient Ion Landing. Analytical Chemistry, 88(17), 8526–8534.
Holuša, J., Lukášová, K., Žižka, Z., Händel, U., Haidler, B., & Wegensteiner, R. (2016). Occurrence of Microsporidium sp. and other pathogens in Ips amitinus (Coleoptera: Curculionidae). Acta Parasitologica, 61(3), 621–628.
Pelantová, H., Bugáňová, M., Holubová, M., Šedivá, B., Zemenová, J., Sýkora, D., … Kuzma, M. (2016). Urinary metabolomic profiling in mice with diet-induced obesity and type 2 diabetes mellitus after treatment with metformin, vildagliptin and their combination. Molecular and Cellular Endocrinology, 431, 88–100.
Zarska, M., Novotny, F., Havel, F., Sramek, M., Babelova, A., Benada, O., … Hodny, Z. (2016). Two-Step Mechanism of Cellular Uptake of Cationic Gold Nanoparticles Modified by (16-Mercaptohexadecyl)trimethylammonium Bromide. Bioconjugate Chemistry, 27(10), 2558–2574.
Ulrych, A., Holečková, N., Goldová, J., Doubravová, L., Benada, O., Kofroňová, O., … Branny, P. (2016). Characterization of pneumococcal Ser/Thr protein phosphatase phpP mutant and identification of a novel PhpP substrate, putative RNA binding protein Jag. BMC Microbiology, 16(1), 1–19.
Myšková, J., Dostálová, A., Pěničková, L., Halada, P., Bates, P. A., & Volf, P. (2016). Characterization of a midgut mucin-like glycoconjugate of Lutzomyia longipalpis with a potential role in Leishmania attachment. Parasites and Vectors, 9(1), 1–10.
Weiszenstein, M., Pavlikova, N., Elkalaf, M., Halada, P., Seda, O., Trnka, J., … Polak, J. (2016). The effect of Pericellular oxygen levels on proteomic profile and lipogenesis in 3T3-L1 differentiated preadipocytes cultured on gas-permeable cultureware. PLoS ONE, 11(3), 1–14.
Rozbeský, D., Adámek, D., Pospíšilová, E., Novák, P., & Chmelík, J. (2016). Solution structure of the lymphocyte receptor Nkrp1a reveals a distinct conformation of the long loop region as compared to in the crystal structure. Proteins: Structure, Function and Bioinformatics, 84(9), 1304–1311.
Masin, J., Osickova, A., Sukova, A., Fiser, R., Halada, P., Bumba, L., … Sebo, P. (2016). Negatively charged residues of the segment linking the enzyme and cytolysin moieties restrict the membrane-permeabilizing capacity of adenylate cyclase toxin. Scientific Reports, 6(March), 1–14.
Svobodová, K., Petráčková, D., Kozická, B., Halada, P., & Novotný, Č. (2016). Mutual interactions of Pleurotus ostreatus with bacteria of activated sludge in solid-bed bioreactors. World Journal of Microbiology and Biotechnology, 32(6).
Mikalová, L., Bosák, J., Hříbková, H., Dědičová, D., Benada, O., Šmarda, J., & Šmajs, D. (2017). Novel temperate phages of Salmonella enterica subsp. salamae and subsp. diarizonae and their activity against pathogenic S. enterica subsp. enterica isolates. PLoS ONE, 12(1), 1–14.
Kasparek, P., Ileninova, Z., Zbodakova, O., Kanchev, I., Benada, O., Chalupsky, K., … Sedlacek, R. (2017). KLK5 and KLK7 Ablation Fully Rescues Lethality of Netherton Syndrome-Like Phenotype. PLoS Genetics, 13(1), 1–21.
Bugáňová, M., Pelantová, H., Holubová, M., Šedivá, B., Maletínská, L., Železná, B., … Haluzík, M. (2017). The effects of liraglutide in mice with diet-induced obesity studied by metabolomics. Journal of Endocrinology, 233(1), 93–104.
Wald, T., Spoutil, F., Osickova, A., Prochazkova, M., Benada, O., Kasparek, P., … Osicka, R. (2017). Intrinsically disordered proteins drive enamel formation via an evolutionarily conserved self-assembly motif. Proceedings of the National Academy of Sciences, 114(9), E1641–E1650.
Patenty
Michael Volny, Petr Novak, Vladimir Havlicek, Petr Pompach: The method of surface modification for the purpose of enrichment of phosphorylated peptides for analysis by desorption/ionization mass spectrometry techniques (EP 2652769 B1)
Miroslav Petricek, Katerina Petrickova, Stanislav Pospisil, Marek Kuzma, Alica Chronakova, Vaclav Kristufek, Ilja Striz: Manumycin-type metabolite called Colabomycin E which inhibits caspase 1 and creation of interleukins, strain produces the Colabomycin E and a method of a production of the Colabomycin E (US 20160168106 A1)
Konference
Bártová, Karel Vališ, Petr Novák, Júlia Starková, Ivana Hermanová, Marek Kuzma: Effect of the anti-cancer treatment on the metabolite profile in cancer cell lines studied by NMR. Central European NMR Meeting, 29th NMR Valtice, 27-30 April 2014, Czech Republic.
Helena Pelantová, Jiří Anýž, Daniel Novák, Lenka Maletínská, Martin Haluzík, Marek Kuzma: NMR-based metabolomics of urine in the MSG mouse model of obesity. Central European NMR Meeting, 29th NMR Valtice, 27-30 April 2014, Czech Republic.
Simona Bártová, Helena Pelantová, Marek Kuzma, Miloslav Suchánek, Lenka Maletínská: NMR metabolomics of rodent models of obesity and lipoatrophy. 9TH ANNUAL CONFERENCE OF THE METABOLOMICS SOCIETY, 1-4 July 2013, SECC Glasgow, Scotland.
Helena Pelantová, Simona Bártová, Blanka Železná, Lenka Maletínská, Marek Kuzma: Metabolomics of Mouse Models of Obesity and Lipoatrophy. SMASH, 22-25 September 2013, Santiago de Compostela, Spain.
Helena Pelantová, Simona Bártová, Blanka Železná, Lenka Maletínská, Marek Kuzma: Metabonomics of mouse models of obesity and lipoatrophy. Central European NMR Meeting, 28th NMR Valtice, 21-24 April 2013, Czech Republic.

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