cImageWindowTabOptical.h

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#ifndef _CIMAGEWINDOWTABOPTICAL_H
#define _CIMAGEWINDOWTABOPTICAL_H
 
#include <QWidget>
#include <QGridLayout>
#include <QHBoxLayout>
#include <QVBoxLayout>
#include <QLabel>
#include <QLineEdit>
#include <QPushButton>
#include <QListWidget>
#include <QComboBox>
#include <QFileDialog>
#include <xercesc/framework/MemBufInputSource.hpp>
#include <xercesc/parsers/XercesDOMParser.hpp>
 
#include "core/utilities.h"
 
 
using namespace xercesc;
 
 
enum eChannelType {
    gray = 0,
    red = 1,
    green = 2,
    blue = 3
};
 
 
struct cTileInfo {
 
    int fieldx;
 
 
    int fieldy;
 
 
    double posx;
 
 
    double posy;
 
 
    cTileInfo() {
        fieldx = 0;
        fieldy = 0;
        posx = 0;
        posy = 0;
    }
 
 
    void print() {
        cout << "fieldx: " << fieldx << endl;
        cout << "fieldy: " << fieldy << endl;
        cout << "posx: " << posx << endl;
        cout << "posy: " << posy << endl;
    }
 
};
 
 
struct cLifMetadata {
 
    string imagename;
 
 
    int microscopytype;
 
 
    string microscopemodel;
 
 
    int inversemicroscopemodel;
 
 
    int magnification;
 
 
    int flipx;
 
 
    int flipy;
 
 
    int dimx;
 
 
    int dimy;
 
 
    int dimz;
 
 
    int dim10;
 
 
    double width;
 
 
    double height;
 
 
    double stageposx;
 
 
    double stageposy;
 
 
    long long unsigned memoryblocksize;
 
 
    string memoryblockid;
 
 
    vector<long long unsigned> memoryblockoffsets;
 
 
    vector<eChannelType> channels;
 
 
    vector<string> luts;
 
 
    int tilescaninfoflipx;
 
 
    int tilescaninfoflipy;
 
 
    vector<cTileInfo> tiles;
 
 
    cLifMetadata() {
        imagename.clear();
        microscopytype = -1;
        microscopemodel.clear();
        inversemicroscopemodel = 0;
        magnification = 0;
        flipx = 0;
        flipy = 0;
        dimx = 0;
        dimy = 0;
        dimz = 0;
        dim10 = 0;
        width = 0;
        height = 0;
        stageposx = 0;
        stageposy = 0;
        memoryblocksize = 0;
        memoryblockid = "";
        memoryblockoffsets.clear();
        channels.clear();
        luts.clear();
        tilescaninfoflipx = -1;
        tilescaninfoflipy = -1;
        tiles.clear();
    }
 
 
    void print() {
        cout << "imagename: " << imagename << endl;
        cout << "microscopytype: " << microscopytype << endl;
        cout << "microscopemodel: " << microscopemodel << endl;
        cout << "inversemicroscopemodel: " << inversemicroscopemodel << endl;
        cout << "magnification: " << magnification << endl;
        cout << "flipx: " << flipx << endl;
        cout << "flipy: " << flipy << endl;
        cout << "dimx: " << dimx << endl;
        cout << "dimy: " << dimy << endl;
        cout << "dimz: " << dimz << endl;
        cout << "dim10: " << dim10 << endl;
        cout << "width: " << width << endl;
        cout << "height: " << height << endl;
        cout << "stageposx: " << stageposx << endl;
        cout << "stageposy: " << stageposy << endl;
        cout << "memoryblocksize: " << memoryblocksize << endl;
        cout << "memoryblockid: " << memoryblockid << endl;
 
        for (int i = 0; i < (int)memoryblockoffsets.size(); i++) {
            cout << "memoryblockoffset " << i + 1 << ": " << memoryblockoffsets[i] << endl;
        }
 
        for (int i = 0; i < (int)channels.size(); i++) {
            cout << "channel " << i + 1 << ": " << channels[i] << endl;
        }
 
        for (int i = 0; i < (int)luts.size(); i++) {
            cout << "lut " << i + 1 << ": " << luts[i] << endl;
        }
 
        cout << "tilescaninfoflipx: " << tilescaninfoflipx << endl;
        cout << "tilescaninfoflipy: " << tilescaninfoflipy << endl;
 
        double avgposx = 0;
        double avgposy = 0;
 
        for (auto& it : tiles) {
            it.print();
 
            avgposx += it.posx;
            avgposy += it.posy;
        }
 
        if (tiles.size() > 0) {
            avgposx /= (double)tiles.size();
            avgposy /= (double)tiles.size();
 
            cout << "avgposx: " << avgposx << endl;
            cout << "avgpoxy: " << avgposy << endl;
        }
 
        cout << endl;
    }
 
};
 
 
void readLifMetadata(string filename, vector<cLifMetadata>& parsedmetadata);
 
 
void parseLifMetadataSubTree(DOMElement* subtree, vector<cLifMetadata>& parsedmetadata);
 
 
void parseLifMetadata(string& metadata, vector<cLifMetadata>& parsedmetadata);
 
 
class cImageWindowTabOptical : public QWidget
{
    Q_OBJECT
 
public:
 
 
    explicit cImageWindowTabOptical(QWidget *parent = 0);
 
 
    void setFormValues(QString& lastdirmicroscopyimage, int numberoflayers);
 
 
    void getFormValues(int& startfromindex, QStringList& tiffilenames, int& navigationindex, QString& liffilename);
 
 
    ~cImageWindowTabOptical();
 
 
private:
 
    QString* lastdirmicroscopyimage;
 
    QGridLayout* gridlayout;
 
    QLabel* labelstartfrom;
    QComboBox* comboboxstartfrom;
 
    QLabel* labelusevaluesfrom;
    QComboBox* comboboxusevaluesfrom;
 
    QLabel* labellif;
    QLineEdit* lineeditlif;
    QPushButton* buttonlif;
 
    QLabel* labelfilenames;
    QListWidget* listwidgetfilenames;
    QPushButton* buttonfilenames;
    QStringList imagenames;
 
 
private slots:
 
    void browseButtonReleased();
 
    void lifButtonReleased();
 
 
};
 
 
#endif