Tutorials (CycloBranch 2.0.x)

If you would like to annotate single MS/MS spectra of (non-)ribosomal peptides and siderophores, see the tutorials for CycloBranch (1.x). See also the extra pages for linear, cyclic, branched, and branch-cyclic peptides; the building blocks editor, sequence/compound database editor, modifications editor, and draw peptide tool.

Tutorials (CycloBranch 1.x)

See also a recent protocol on how to configure CycloBranch for different use-cases:

Tomas Pluhacek, Anton Skriba, Jiri Novak, Dominika Luptakova and Vladimir Havlicek.
Analysis of Microbial Siderophores by Mass Spectrometry.
In: Sanjoy K. Bhattacharya (ed.), Metabolomics: Methods and Protocols, Methods in Molecular Biology, vol. 1996, pp. 131-153, Springer, 2019. DOI: 10.1007/978-1-4939-9488-5_12.