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CycloBranch
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| CcAboutWidget | The widget representing the dialog 'About' |
| CcBranchCyclicWidget | Visualization of a branch-cyclic peptide |
| CcBranchedWidget | Visualization of a branched peptide |
| CcBrick | The class representing a building block (brick) |
| CcBricksDatabase | The class representing a database of building blocks (bricks) |
| CcBricksDatabaseProxyModel | A proxy model for editor of database of building blocks |
| CcBricksDatabaseWidget | An editor of building blocks database |
| CcCalibrationChart | Calibration chart |
| CcCalibrationChartProxyModel | A table proxy model |
| CcCalibrationChartScene | The implementation of an isotopic pattern simulator (graphics) |
| CcCandidate | The class representing a peptide sequence candidate |
| CcCandidateSet | The class representing a set of peptide sequence candidates |
| CcCheckBoxDelegate | A checkbox item delegate |
| CcChromatogramWindow | Chromatogram window |
| CcChromatogramWindowWidget | Chromatogram window widget |
| CcComboBoxDelegate | A combobox item delegate |
| CcCoordinateInfo | Store aggregated information about a coordinate |
| CcCyclicWidget | Visualization of a cyclic peptide |
| CcDefaultNeutralLosses | The class representing a vector of default neutral losses |
| CcDefineCalibrationWidget | The widget for definition of calibration curve |
| CcDeNovoGraph | The class implementing the de novo graph |
| CcDeNovoGraphNode | The class representing a node in the de novo graph |
| CcDrawPeptideWidget | Draw a peptide from a sequence of building blocks |
| CcEdge | The structure representing an outgoing edge from a node |
| CcEnvelopeSummaryTableKeyMS_comp | Comparison object for cSummaryTableKeyMS (whole envelope) |
| CcEventFilter | An event filter |
| CcExportDialog | The implementation of a dialog to export spectrum/peptide image |
| CcFindDialog | The implementation of a find dialog |
| CcFormulaPredictor | Predicts the molecular formula from the exact mass |
| CcFormulaPredictorRowItem | An auxiliary structure representing a row in the output table |
| CcFormulaPredictorThread | The thread which searches molecular formulas corresponding to m/z value |
| CcFragmentIons | The detailed definitions of all supported fragment ion types |
| CcFragmentIonsListWidget | The widget for selection of fragment ion types |
| CcFragmentIonType | The struct for definition of a fragment ion type |
| CcGlobalPreferences | The class storing global preferences |
| CcGraphReaderThread | The class representing a thread which scans the de novo graph for peptide sequence candidates |
| CcGraphWidget | The widget representing the dialog 'View->Graph' |
| CcHTMLDelegate | A delegate to display rich text |
| CcHTMLExportDialog | The implementation of HTML export dialog |
| CcImageWindow | Image window |
| CcImageWindowImportDialog | Import dialog in image window |
| CcImageWindowTabElectron | The class representing a tab used to import images from electron microscopy |
| CcImageWindowTabOptical | The class representing a tab used to import images from light microscopy |
| CcImageWindowWidget | Image window widget |
| CcImzML | ImzML parser |
| CcImzMLItem | A parsed imzML item |
| CcIonLabel | Auxiliary structure for visualization of labels of fragment ions |
| CcIonSummaryTableKeyMS_comp | Comparison object for cSummaryTableKeyMS (independent ions) |
| CcIonType | The struct for definition of a ion type |
| CcIsotopeMap | The class representing an isotope map |
| CcIsotopePatternCache | Isotope pattern cache (LRU cache is implemented) |
| CcLifMetadata | A structure to keep parsed lif metadata |
| CcLinearWidget | Visualization of a linear peptide |
| CcMainThread | The class representing a thread launched by the command 'Search->Run' |
| CcMainWindow | The class representing the main window of the application |
| CcMainWindowProxyModel | A table proxy model |
| CcModificationsProxyModel | A proxy model for editor of database of modifications |
| CcModificationsWidget | An editor of N-/C-terminal modifications database |
| CcMultipleButtonDelegate | A delegate to create multiple buttons |
| CcMultipleDatasetsTableProxyModel | A table proxy model |
| CcMultipleDatasetsTableWidget | Aggregated results from multiple datasets |
| CcMzML | MzML parser |
| CcNeutralLossesListWidget | The widget for selection of types of neutral losses |
| CcompareStringBySize | Compare items in a string vector by size |
| CcParameters | The class storing parameters of the application |
| CcParametersWidget | The class representing a widget for editing parameters of the application |
| CcPatternSimulatorSceneWidget | The implementation of an isotopic pattern simulator (graphics) |
| CcPatternSimulatorWidget | The implementation of an isotopic pattern simulator (window) |
| CcPeak | A structure representing a peak in a mass spectrum |
| CcPeakListSeries | The class representing a series of peaklists |
| CcPeaksList | The class representing a peak list |
| CcPeriodicTableMap | The class representing a periodic table |
| CcPreferencesDialog | Preferences dialog |
| CcPreferencesIonTypeDialog | Preferences dialog |
| CcPreferencesTabDataProcessing | The class representing a tab used to define the data processing parameters |
| CcPreferencesTabDirectories | The class representing a tab of default directories |
| CcPreferencesTabIonTypes | The class representing a tab of ion types |
| CcPreferencesTabURLs | The class representing a tab of URLs |
| CcPubchemCIDReader | The functor used to get the CIDs of compounds with the same formula |
| CcPubchemNameReader | The functor used to get the names of compounds from CID |
| CcPubChemSearchWidget | The widget representing the PubChem search widget |
| CcRowItemInfo | An auxiliary row info structure |
| CcSequence | The class representing a sequence |
| CcSequenceDatabase | The class representing a database of sequences |
| CcSequenceDatabaseProxyModel | A proxy model for editor of database of sequences |
| CcSequenceDatabaseWidget | An editor of sequences database |
| CcSpectrumAnalyzerThreadMS1 | The class representing a thread for an initial check of LC-MS and MSI spectra |
| CcSpectrumComparatorThreadMS1 | The class representing a thread for comparison of a theoretical spectrum with a peak list (MS1 level) |
| CcSpectrumComparatorThreadMS2 | The class representing a thread for comparison of a theoretical spectrum with a peak list (MS2 level) |
| CcSpectrumDetailProxyModel | A table proxy model |
| CcSpectrumDetailWidget | The class representing a widget for visualisation of a detail of a spectrum (opened after doubleclick on a row when results are reported) |
| CcSpectrumGeneratorThreadMS1 | The class representing a thread for generating a theoretical spectrum (MS1 level) |
| CcSpectrumSceneWidget | The widget representing a 2D mass spectrum |
| CcSummaryFormula | The representation of a summary formula |
| CcSummaryPeaksTableProxyModel | A table proxy model |
| CcSummaryPeaksTableWidget | Summary table of matched peaks |
| CcSummaryTableKeyMS | Key to reduce the summary table when exporting statistics for MS and MSI data |
| CcSummaryTableKeyMSMS | Key to reduce the summary table when exporting statistics for MS/MS data |
| CcSummaryTableKeyMSMS_comp | Comparison object for cSummaryTableKeyMSMS |
| CcTablePosition | Position in QTableWidget |
| CcTheoreticalSpectrum | The class representing a theoretical mass spectrum |
| CcTheoreticalSpectrumList | The class representing lists of theoretical spectra |
| CcTileInfo | Description of an image tile |
| CcViewButtonDelegate | A delegate to create a reference view button |
| Chash_cCandidate | The structure defining a hash function of cCandidate |
| Chash_cEdge | The structure defining a hash function of cEdge |
| Chash_cIonLabel | The structure defining a hash function of cIonLabel |
| ChintStructure | An auxiliary structure for search hints |
| Cisotope | Representation of an isotope |
| ClayerInfo | Paramaters of a layer |
| CmatchedSeries | An auxiliary structure for visualisation of matched series of fragment ions |
| CmicroscopyLayerInfo | Paramaters of a microscopy layer |
| CneutralLoss | The structure for a detailed definition of a neutral loss |
| CnodeEdge | An auxiliary structure to store relationship between a node and an edge |
| CsplitSite | The structure representing a splitting site of a cyclic peptide |
| CTRotationInfo | An auxiliary structure representing a branch permutation of a branched peptide |