cSummaryPeaksTableWidget.h

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#ifndef _CSUMMARYPEAKSTABLEWIDGET_H
#define _CSUMMARYPEAKSTABLEWIDGET_H
 
#include <map>
#include <QWidget>
#include <QDesktopServices>
#include <QUrl>
#include <QFileInfo>
#include <QMainWindow>
#include <QToolBar>
#include <QAction>
#include <QTableView>
#include <QStandardItemModel>
#include <QStandardItem>
#include <QItemDelegate>
#include <QMessageBox>
#include <QComboBox>
#include <QStringListModel>
#include <QCompleter>
 
#include "core/utilities.h"
#include "core/cGlobalPreferences.h"
#include "gui/cViewButtonDelegate.h"
#include "gui/cSummaryPeaksTableProxyModel.h"
#include "gui/cMainWindowProxyModel.h"
#include "gui/cHTMLDelegate.h"
#include "gui/cPubChemSearchWidget.h"
#include "gui/cEventFilter.h"
 
 
// forward declaration
class cParameters;
class cTheoreticalSpectrum;
class cTheoreticalSpectrumList;
class QHBoxLayout;
class QVBoxLayout;
class QPushButton;
class QCheckBox;
class QLineEdit;
class QMenuBar;
class QMenu;
 
 
struct cSummaryTableKeyMS {
 
    string id;
 
 
    string iontype;
 
 
    string theoreticalmz;
 
 
    string summaryformula;
 
 
    string name;
 
 
    string reference;
 
 
    string score;
 
 
    string fdr;
 
 
    void clear() {
        id.clear();
        iontype.clear();
        theoreticalmz.clear();
        summaryformula.clear();
        name.clear();
        reference.clear();
        score.clear();
        fdr.clear();
    }
 
};
 
 
struct cSummaryTableKeyMSMS {
 
    string theoreticalmz;
 
 
    string thint;
 
 
    string experimentalmz;
 
 
    string relint;
 
 
    string absint;
 
 
    string ppmerror;
 
 
    string summary;
 
 
    void clear() {
        theoreticalmz.clear();
        thint.clear();
        experimentalmz.clear();
        relint.clear();
        absint.clear();
        ppmerror.clear();
        summary.clear();
    }
 
};
 
 
struct cIonSummaryTableKeyMS_comp {
 
    bool operator()(const cSummaryTableKeyMS& left, const cSummaryTableKeyMS& right) const {
        return (left.iontype + left.theoreticalmz + left.summaryformula + left.name + left.reference < right.iontype + right.theoreticalmz + right.summaryformula + right.name + right.reference);
    }
 
};
 
 
struct cEnvelopeSummaryTableKeyMS_comp {
 
    bool operator()(const cSummaryTableKeyMS& left, const cSummaryTableKeyMS& right) const {
        return (left.id + left.iontype + left.name + left.reference < right.id + right.iontype + right.name + right.reference);
    }
 
};
 
 
struct cSummaryTableKeyMSMS_comp {
 
    bool operator()(const cSummaryTableKeyMSMS& left, const cSummaryTableKeyMSMS& right) const {
        return (left.theoreticalmz + left.thint + left.experimentalmz + left.relint + left.absint + left.ppmerror + left.summary < right.theoreticalmz + right.thint + right.experimentalmz + right.relint + right.absint + right.ppmerror + right.summary);
    }
 
};
 
 
void addEICPeak(cParameters* parameters, cPeaksList& eicchromatogram, cTheoreticalSpectrum& theoreticalspectrum, cPeaksList& experimentalspectrum);
 
 
class cSummaryPeaksTableWidget : public QMainWindow
{
    Q_OBJECT
 
public:
 
 
    cSummaryPeaksTableWidget(cGlobalPreferences* globalpreferences, QWidget* parent = (QWidget *)0);
 
 
    ~cSummaryPeaksTableWidget();
 
 
    void closeEvent(QCloseEvent *event);
 
 
    bool prepareToShow(QStandardItemModel* resultsstandardmodel, cMainWindowProxyModel* resultsproxymodel, cParameters* parameters, cTheoreticalSpectrumList* listoftheoreticalspectra, int activefileid, bool showisomers);
 
 
    void deleteTable();
 
 
    void updateFilterBySelectedRegion(int xmin, int xmax, int ymin, int ymax);
 
 
    void applyGlobalPreferences(cGlobalPreferences* globalpreferences);
 
 
    cPubChemSearchWidget* getPubChemSearchWidget();
 
 
    void filterTablerows();
 
 
    void filterCompound(string name, string iontype, int datatypeview, string mzstr);
 
 
private:
 
    QString title;
 
    cGlobalPreferences* globalpreferences;
 
    cParameters* parameters;
    QWidget* parent;
 
    cPubChemSearchWidget* pubchemsearchwidget;
 
    QMenuBar* menuBar;
    QMenu* menuFile;
    //QMenu* menuSearch;
    QMenu* menuHelp;
 
    QToolBar* toolbarFile;
    QAction* actionExportCSV;
    QAction* actionExportDatabase;
    QAction* actionExportStatistics;
    QAction* actionCloseWindow;
 
    //QToolBar* toolbarSearch;
    //QAction* actionSearchPubChem;
 
    QToolBar* toolbarHelp;
    QAction* actionHTMLDocumentation;
 
    QToolBar* toolbarFilter;
    QWidget* rowsfilterwidget;
    QHBoxLayout* rowsfilterhbox;
 
    QComboBox* rowsfilteroperator;
 
    QComboBox* rowsfiltercombobox1;
    QComboBox* rowsfiltercomparatorcombobox1;
    QStringListModel* rowsfilterstringlistmodel1;
    QCompleter* rowsfilterlinecompleter1;
    QLineEdit* rowsfilterline1;
    QPushButton* rowsfilterleft1;
    QPushButton* rowsfilterright1;
 
    QComboBox* rowsfiltercombobox2;
    QComboBox* rowsfiltercomparatorcombobox2;
    QStringListModel* rowsfilterstringlistmodel2;
    QCompleter* rowsfilterlinecompleter2;
    QLineEdit* rowsfilterline2;
    QPushButton* rowsfilterleft2;
    QPushButton* rowsfilterright2;
 
    QCheckBox* rowsfiltercasesensitive;
    QCheckBox* rowsfilterwholeword;
    QPushButton* rowsfilterbutton;
    QPushButton* rowsfilterclearbutton;
 
    QTableView* database;
    QStandardItemModel* databasemodel;
    cSummaryPeaksTableProxyModel* proxymodel;
    QVBoxLayout* mainlayout;
    QWidget* mainwidget;
 
    QString lastdirexporttocsv;
    QString lastdirexportdatabase;
    QString lastdirexportstatisticstocsv;
 
    vector<double> rtimes;
 
    vector<cCoordinateInfo> origcoordinateinfo;
    cPeaksList origeicchromatogram;
 
    int activefileid;
 
    void addCoordinateInfo(int spectrumindex, vector<cCoordinateInfo>& coordinateinfo, cTheoreticalSpectrum& theoreticalspectrum, cPeaksList& experimentalspectrum);
 
 
protected:
 
 
    void keyPressEvent(QKeyEvent *event);
 
 
private slots:
 
    void closeWindow();
 
 
    void filterRows();
 
 
    void resetFilter();
 
 
    void exportToCsv();
 
 
    void exportToDatabase();
 
 
    void exportStatistics();
 
 
    void showHTMLDocumentation();
 
 
    void rowDoubleClicked(const QModelIndex& item);
 
 
    void rowsFilterLeft1Slot();
 
 
    void rowsFilterRight1Slot();
 
 
    void rowsFilterLeft2Slot();
 
 
    void rowsFilterRight2Slot();
 
 
    void searchPubChem();
 
 
signals:
 
 
    void tableCancelled();
 
 
    void summaryPeaksTableRowDoubleClicked(int rowid, double experimentalmz);
 
 
    void resetRegion();
 
    
    void sendFilterOptionsToImageWindow(vector<cCoordinateInfo> coordinateinfo, bool operatortype, string columnname1, string comparatorname1, string filterstring1, string columnname2, string comparatorname2, string filterstring2, bool casesensitive, bool wholeword);
 
 
    void sendFilterOptionsToChromatogram(cPeaksList eic);
 
 
};
 
#endif