cCandidate Member List

This is the complete list of members for cCandidate, including all inherited members.

calculatePrecursorMassFromBricks(cBricksDatabase &brickdatabasewithcombinations, cParameters *parameters)	cCandidate
calculateSummaryFormulaFromBricks(cParameters &parameters, ePeptideType peptidetype, double precursormass=0)	cCandidate
cCandidate()	cCandidate
cCandidate(vector< string > &composition, vector< nodeEdge > &path, eFragmentIonType startiontype, int startmodifID, int endmodifID, int middlemodifID, int middlepos)	cCandidate
cCandidate(vector< string > &composition, vector< nodeEdge > &path, eFragmentIonType startiontype, int startmodifID, int endmodifID, int middlemodifID, int branchstart, int branchend)	cCandidate
checkKetideBlocks(cBricksDatabase &bricksdatabase, ePeptideType peptidetype, bool regularblocksorder)	cCandidate
checkKetideSequence(cBricksDatabase &bricksdatabase, ePeptideType peptidetype, bool regularblocksorder)	cCandidate
clear()	cCandidate
compare(cCandidate &candidate)	cCandidate
getAcronymPeptideNameWithHTMLReferences()	cCandidate
getAcronyms()	cCandidate
getAcronymsTComposition(cBricksDatabase &brickdatabase)	cCandidate
getBackboneAcronyms()	cCandidate
getBranchAcronyms()	cCandidate
getBranchCyclicRotations(vector< cCandidate > &branchcyclicrotations, bool includerevertedrotations)	cCandidate
getBranchEnd()	cCandidate
getBranchSize()	cCandidate
getBranchStart()	cCandidate
getComposition()	cCandidate
getEndModifID()	cCandidate
getLeftResidueType(cBricksDatabase &bricksdatabase)	cCandidate
getMiddleModifID()	cCandidate
getName()	cCandidate
getPath()	cCandidate
getPathAsString()	cCandidate
getPermutations(cCandidateSet &permutations, bool *terminatecomputation)	cCandidate
getPermutationsOfBranches(vector< TRotationInfo > &tpermutations)	cCandidate
getRealNameTComposition(cBricksDatabase &brickdatabase)	cCandidate
getRealPeptideName()	cCandidate
getRevertedTComposition(bool usebrackets)	cCandidate
getRightResidueType(cBricksDatabase &bricksdatabase)	cCandidate
getRotations(vector< string > &rotations, bool includerevertedrotations)	cCandidate
getStartIonType()	cCandidate
getStartModifID()	cCandidate
getSummaryFormula()	cCandidate
getTComposition()	cCandidate
hasEqualTPermutations(cCandidate &candidate)	cCandidate
hasFirstBrickArtificial(cBricksDatabase &brickdatabasewithcombinations)	cCandidate
hasLastBrickArtificial(cBricksDatabase &brickdatabasewithcombinations)	cCandidate
hasLastBrickInvalid(cBricksDatabase &brickdatabasewithcombinations)	cCandidate
hasOnlyArtificialBricks(cBricksDatabase &brickdatabasewithcombinations)	cCandidate
isEqualTo(cCandidate &candidate)	cCandidate
load(ifstream &is)	cCandidate
prepareBranchedCandidates(cCandidateSet &result, ePeptideType peptidetype, bool *terminatecomputation)	cCandidate
revertComposition()	cCandidate
setAcronymPeptideNameWithHTMLReferences(cBricksDatabase &bricksdatabase, ePeptideType peptidetype)	cCandidate
setAcronyms(cBricksDatabase &bricksdatabase)	cCandidate
setBackboneAcronyms(cBricksDatabase &bricksdatabase)	cCandidate
setBranchAcronyms(cBricksDatabase &bricksdatabase)	cCandidate
setCandidate(vector< string > &composition, vector< nodeEdge > &path, eFragmentIonType startiontype, int startmodifID, int endmodifID, int middlemodifID, int middlepos)	cCandidate
setCandidate(vector< string > &composition, vector< nodeEdge > &path, eFragmentIonType startiontype, int startmodifID, int endmodifID, int middlemodifID, int branchstart, int branchend)	cCandidate
setEndModifID(int id)	cCandidate
setMiddleModifID(int id)	cCandidate
setName(string &name)	cCandidate
setPath(cDeNovoGraph &graph, cParameters *parameters)	cCandidate
setRealPeptideName(cBricksDatabase &bricksdatabase, ePeptideType peptidetype)	cCandidate
setStartIonType(eFragmentIonType iontype)	cCandidate
setStartModifID(int id)	cCandidate
setSummaryFormula(cSummaryFormula &summary)	cCandidate
store(ofstream &os)	cCandidate