CycloBranch
cDeNovoGraph Member List

This is the complete list of members for cDeNovoGraph, including all inherited members.

cDeNovoGraph()cDeNovoGraph
connectEdgesFormingPathsNotFinishingInPrecursor(bool &terminatecomputation)cDeNovoGraph
connectEdgesFormingPathsNotStartingFromFirstNode(bool &terminatecomputation)cDeNovoGraph
createGraph(bool &terminatecomputation)cDeNovoGraph
getBrickDatabaseWithCombinations()cDeNovoGraph
getNumberOfEdges()cDeNovoGraph
initialize(cMainThread &os, cParameters &parameters)cDeNovoGraph
operator[](int position)cDeNovoGraph
printGraph()cDeNovoGraph
printPaths(cMainThread *os, cDeNovoGraphNode &node, vector< string > &path, vector< string > &composition)cDeNovoGraph
removeEdgesFormingPathsNotFinishingInPrecursor(bool &terminatecomputation)cDeNovoGraph
removeEdgesFormingPathsNotStartingFromFirstNode(bool &terminatecomputation)cDeNovoGraph
removePathsWhichCanBeSubstitutedByLongerPath(bool &terminatecomputation)cDeNovoGraph
sortEdgesByPPMError()cDeNovoGraph
sortEdgesByTargetNodeIntensity()cDeNovoGraph
startGraphReader(cCandidateSet &candidates, long long unsigned &count, int scanmode, bool &terminatecomputation)cDeNovoGraph