cParameters Member List

This is the complete list of members for cParameters, including all inherited members.

advancedformulacheck	cParameters
basicformulacheck	cParameters
blindedges	cParameters
bricksdatabase	cParameters
bricksdatabasefilename	cParameters
calculatefdrs	cParameters
calculateNeutralLosses(bool &terminatecomputation, string &errormessage)	cParameters
checkAndPrepare(bool &terminatecomputation)	cParameters
checkModifications(cSequence &sequence, int &startmodifid, int &endmodifid, int &middlemodifid, string &errormessage)	cParameters
clear()	cParameters
convertprofiledata	cParameters
cParameters()	cParameters
cycliccterminus	cParameters
cyclicnterminus	cParameters
defaultmaxx	cParameters
defaultmaxy	cParameters
defaultpixelsizex	cParameters
defaultpixelsizey	cParameters
enableratio54Fe56Fe	cParameters
enableratio60Ni58Ni	cParameters
enableratio62Ni58Ni	cParameters
enableratio65Cu63Cu	cParameters
enableratio66Zn64Zn	cParameters
enableratio67Zn64Zn	cParameters
enableratio68Zn64Zn	cParameters
enablescrambling	cParameters
fragmentionsfordenovograph	cParameters
fragmentmasserrortolerance	cParameters
fwhm	cParameters
generateCompounds(bool &terminatecomputation, string &errormessage)	cParameters
generateisotopepattern	cParameters
hitsreported	cParameters
intensitytolerance	cParameters
internalfragments	cParameters
iondefinitions	cParameters
ionsfortheoreticalspectraMS1	cParameters
ionsfortheoreticalspectraMS2	cParameters
isotopeformulaidtodesc	cParameters
linebafprocessing	cParameters
load(ifstream &is, int fileversionpart1, int fileversionpart2, int fileversionpart3)	cParameters
maximumbricksincombination	cParameters
maximumbricksincombinationbegin	cParameters
maximumbricksincombinationend	cParameters
maximumbricksincombinationmiddle	cParameters
maximumcombinedelements	cParameters
maximumcombinedlosses	cParameters
maximumcumulativemass	cParameters
maximummz	cParameters
maximumnumberofcandidates	cParameters
maximumnumberofthreads	cParameters
maximumrt	cParameters
maxratio54Fe56Fe	cParameters
maxratio60Ni58Ni	cParameters
maxratio62Ni58Ni	cParameters
maxratio65Cu63Cu	cParameters
maxratio66Zn64Zn	cParameters
maxratio67Zn64Zn	cParameters
maxratio68Zn64Zn	cParameters
metaladducts	cParameters
minimumabsoluteintensitythreshold	cParameters
minimumannotationintensityabsolute	cParameters
minimumannotationintensityrelative	cParameters
minimumfeaturesize	cParameters
minimumiontypes	cParameters
minimummz	cParameters
minimumpatternsize	cParameters
minimumrelativeintensitythreshold	cParameters
minimumrt	cParameters
minratio54Fe56Fe	cParameters
minratio60Ni58Ni	cParameters
minratio62Ni58Ni	cParameters
minratio65Cu63Cu	cParameters
minratio66Zn64Zn	cParameters
minratio67Zn64Zn	cParameters
minratio68Zn64Zn	cParameters
mode	cParameters
modificationsfilename	cParameters
mzdifftolerance	cParameters
neutrallossesdefinitions	cParameters
neutrallossesfortheoreticalspectra	cParameters
noratiocheck	cParameters
numberofgeneratedneutrallosses	cParameters
originalelementsdefinitions	cParameters
originalelementsfortheoreticalspectra	cParameters
originalneutrallossesdefinitions	cParameters
originalneutrallossesfortheoreticalspectra	cParameters
originalpeaklistfilenames	cParameters
originalsearchedsequence	cParameters
originalsequencetag	cParameters
pchemresults	cParameters
peakidtodesc	cParameters
peaklistfileformats	cParameters
peaklistfilenames	cParameters
peaklistseriesvector	cParameters
peptidetype	cParameters
precursoradduct	cParameters
precursorcharge	cParameters
precursormass	cParameters
precursormasserrortolerance	cParameters
prepareLossesAndCompounds(bool &terminatecomputation)	cParameters
printToString()	cParameters
profiledatafilename	cParameters
regularblocksorder	cParameters
reportunmatchedtheoreticalpeaks	cParameters
scannumber	cParameters
scoretype	cParameters
searchedmodifications	cParameters
searchedsequence	cParameters
searchedsequenceCtermmodif	cParameters
searchedsequenceformula	cParameters
searchedsequenceNtermmodif	cParameters
searchedsequenceTmodif	cParameters
sequencedatabase	cParameters
sequencedatabasefilename	cParameters
sequencetag	cParameters
setOutputStream(cMainThread &os)	cParameters
similaritysearch	cParameters
store(ofstream &os)	cParameters
updateFragmentDefinitions()	cParameters
useprofiledata	cParameters
vendor	cParameters