CycloBranch
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The editor is opened using the command "Tools -> Modifications Editor" from the Main Window. Use F1 to open this help.
Changes in the editor do not impact the settings of the engine until they are saved !
New Database (CTRL + N)
Create a new database of modifications.
Open Database (CTRL + O)
Open a database of modifications.
Save Database (CTRL + S)
Save the database of modifications.
Save Database As... (CTRL + D)
Save the database of modifications with another file name.
Import Database (CTRL + I)
Import a database of modifications.
Close (Esc)
Close window.
Insert Row (Insert)
Insert a new row at the bottom of the table.
Remove Selected Rows (Delete)
Remove checked rows.
Select All (CTRL + A)
Select all rows.
Unselect Rows (CTRL + U)
Unselect all rows.
HTML Documentation (F1)
Show HTML documentation.
See details here.
The list of modifications is a text file (*.txt) containing one modification per line. Each line contains the following items separated by tabulars:
A line starting with the hash '#' is a comment which is not processed.
The following pre-defined databases of terminal modifications are available in "Modifications" folder:
Location | Content |
---|---|
acetyl.txt | acetylation |
acetyl_amidated.txt | acetylation and amidation |
amidated.txt | amidation |
default_inhouse.txt | 4 modifications (compiled in-house) |
ethanolamine.txt | ethanolamine |
ethanolamine_formyl.txt | ethanolamine and formyl |
norine-terminal-blocks.txt | 7 terminal blocks/modifications compiled from Norine (version July, 2013) |
putrescine.txt | putrescine |
tutorial5.txt | 4 modifications used in Tutorial 5 |
custom | Download Template for Excel |