Career

Available Ph.D. positions
We are looking for passionate professionals
Are you interested? Write your inquiry to vlhavlic@biomed.cas.cz
We collaborate with Palacky University in Olomouc, see
https://www.prf.upol.cz/en/prospective-students/doctoral-studies/
https://www.prf.upol.cz/en/prospective-students/doctoral-studies/thesis-topics/#c48727
Deadline of applications: 30 April 2025
and University of Chemistry and Technology in Prague, see
https://phd.vscht.cz/prospective-students/study-programmes-and-phd-topics
https://phd.vscht.cz/prospective-students/study-programmes-and-phd-topics/phd-topics/program/locale/en/22330/AD301
Deadline of applications: 15 April 2025
You are an ideal candidate if you are familiar with analytical chemistry/mass spectrometry and, at the same time, have sufficient experience in clinical microbiology or chemistry.
Metabolic exchange in polymicrobial infections
Polymicrobial infections, where multiple microbial species co-infect a host, often exhibit synergistic interactions that enhance the collective pathogenicity. We will study neutrophil- modulated fungal-bacterial and fungal-fungal interactions involving metals, metallophores, and metalloproteins, which are the critical molecular players of all parties in the tussle. We will investigate the physicochemical dimensions of the microbe and host molecules at the inflammation site using metal-linked native mass spectrometry, metabolomics, imaging, and immunoassays. In in vitro studies, we will define critical infection processes at the intramolecular, molecular, intracellular, and intercellular levels. Biomolecular interactions established in vitro will be studied in human body fluids or biopsies. AIMS: To demonstrate the non-canonical roles of host and pathogenic metal-derived molecular players. Through the molecular mechanisms underlying polymicrobial infections to identify novel host cellular targets for microbial antigens.
Metal ion dynamics in infection development as a molecular factor in neurodegeneration
This project aims to establish a multidisciplinary team that will focus on bacterial survival mechanisms in central nervous system and their effect on metal-dependent mechanisms involved in neuronal signaling by using spatial multi-omics approaches. The project seeks to ascertain the correlation between microbial proliferation and alterations in the distribution of metals, which result in defects within the neurotransmitter network in specific brain regions. This endeavor aims to enhance the mechanistic comprehension of the molecular mechanisms of neurological impairments associated with post-infection neurological sequelae, potentially offering a molecular etiological link to neurodegenerative diseases. The long-term implications of this research are poised to catalyze the development of targeted antimicrobial drugs, with significant impacts on scientific understanding in the domains of neurology and neuro-infectiology.