Visualization of a cyclic peptide. More...

#include <math.h>
#include <QWidget>
#include <QPalette>
#include "core/cTheoreticalSpectrum.h"
#include "gui/cLinearWidget.h"

Classes
class	cCyclicWidget
	Visualization of a cyclic peptide. More...

Functions
void	paintCircle (QPainter &painter, vector< string > &acronymsofblocks, int centerx, int centery, int radius, double angle, int horizontalstep, int linesize, int cornerlinesize, bool drawdashlines, int visiblerotationid, unordered_set< cIonLabel, hash_cIonLabel > &labels)
	Paint the circle of a cyclic or a branch-cyclic peptide. More...

void	generateCyclicLabelsToRight (bool nterminal, int rotationid, int rotationstart, int fragmentstart, int fragmentend, int numberofringblocks, unordered_set< cIonLabel, hash_cIonLabel > &labels, cParameters parameters, cTheoreticalSpectrum theoreticalspectrum, int centerx, int centery, int radius, double angle, int linesize, int cornerlinesize, string visibleionseries, string visibleneutralloss, int visiblerotationid, int branchstart, int branchend)
	Generate labels of fragment ions of a cyclic peptide (direction right). More...

void	generateCyclicLabelsToLeft (bool nterminal, int rotationid, int rotationstart, int fragmentstart, int fragmentend, int numberofringblocks, unordered_set< cIonLabel, hash_cIonLabel > &labels, cParameters parameters, cTheoreticalSpectrum theoreticalspectrum, int centerx, int centery, int radius, double angle, int linesize, int cornerlinesize, string visibleionseries, string visibleneutralloss, int visiblerotationid, int branchstart, int branchend)
	Generate labels of fragment ions of a cyclic peptide (direction left). More...

Detailed Description

Visualization of a cyclic peptide.

Function Documentation

void generateCyclicLabelsToLeft	(	bool	nterminal,
		int	rotationid,
		int	rotationstart,
		int	fragmentstart,
		int	fragmentend,
		int	numberofringblocks,
		unordered_set< cIonLabel, hash_cIonLabel > &	labels,
		cParameters *	parameters,
		cTheoreticalSpectrum *	theoreticalspectrum,
		int	centerx,
		int	centery,
		int	radius,
		double	angle,
		int	linesize,
		int	cornerlinesize,
		string	visibleionseries,
		string	visibleneutralloss,
		int	visiblerotationid,
		int	branchstart,
		int	branchend
	)

Generate labels of fragment ions of a cyclic peptide (direction left).

Parameters

nterminal	if true only nterminal fragment ions are drawn, if false only cterminal fragment ions are drawn
rotationid	id of a sequence rotation
rotationstart	starting point on a ring to draw a series
fragmentstart	first fragment to draw
fragmentend	last fragment to draw
numberofringblocks	number of building blocks on the ring
labels	labels of fragment ions
parameters	a pointer to parameters of the application
theoreticalspectrum	a theoretical spectrum
centerx	x coordinate of a center of the ring
centery	y coordinate of a center of the ring
radius	radius of the ring
angle	an angle between two building blocks
linesize	length of separators between building blocks
cornerlinesize	length of endings of separators between building blocks
visibleionseries	name of a ion series to be visualized
visibleneutralloss	name of a neutral loss to be visualized
visiblerotationid	id of a rotation whose fragment ions are visualized
branchstart	starting position of a branch
branchend	end position of a branch

void generateCyclicLabelsToRight	(	bool	nterminal,
		int	rotationid,
		int	rotationstart,
		int	fragmentstart,
		int	fragmentend,
		int	numberofringblocks,
		unordered_set< cIonLabel, hash_cIonLabel > &	labels,
		cParameters *	parameters,
		cTheoreticalSpectrum *	theoreticalspectrum,
		int	centerx,
		int	centery,
		int	radius,
		double	angle,
		int	linesize,
		int	cornerlinesize,
		string	visibleionseries,
		string	visibleneutralloss,
		int	visiblerotationid,
		int	branchstart,
		int	branchend
	)

Generate labels of fragment ions of a cyclic peptide (direction right).

Parameters

nterminal	if true only nterminal fragment ions are drawn, if false only cterminal fragment ions are drawn
rotationid	id of a sequence rotation
rotationstart	starting point on a ring to draw a series
fragmentstart	first fragment to draw
fragmentend	last fragment to draw
numberofringblocks	number of building blocks on the ring
labels	labels of fragment ions
parameters	a pointer to parameters of the application
theoreticalspectrum	a theoretical spectrum
centerx	x coordinate of a center of the ring
centery	y coordinate of a center of the ring
radius	radius of the ring
angle	an angle between two building blocks
linesize	length of separators between building blocks
cornerlinesize	length of endings of separators between building blocks
visibleionseries	name of a ion series to be visualized
visibleneutralloss	name of a neutral loss to be visualized
visiblerotationid	id of a rotation whose fragment ions are visualized
branchstart	starting position of a branch
branchend	end position of a branch

void paintCircle	(	QPainter &	painter,
		vector< string > &	acronymsofblocks,
		int	centerx,
		int	centery,
		int	radius,
		double	angle,
		int	horizontalstep,
		int	linesize,
		int	cornerlinesize,
		bool	drawdashlines,
		int	visiblerotationid,
		unordered_set< cIonLabel, hash_cIonLabel > &	labels
	)

Paint the circle of a cyclic or a branch-cyclic peptide.

Parameters

painter	a reference to current QPainter
acronymsofblocks	acronyms of building blocks
centerx	x coordinate of a center of the ring
centery	y coordinate of a center of the ring
radius	radius of the ring
angle	an angle between two building blocks
horizontalstep	determine width of rectangles with the acronyms of building blocks
linesize	length of separators between building blocks
cornerlinesize	length of endings of separators between building blocks
drawdashlines	true when dashed lines between blocks and numbers of blocks are painted, false otherwise
visiblerotationid	an identifier of a rotation of a cyclic peptide
labels	labels of fragment ions