cImzML.h

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#ifndef _CIMZML_H
#define _CIMZML_H
 
 
#include <xercesc/parsers/XercesDOMParser.hpp>
#include <xercesc/dom/DOM.hpp>
#include <string>
#include <vector>
#include <sstream>
#include <QFile>
#include <QCryptographicHash>
 
#include "core/cMzML.h"
 
using namespace std;
using namespace xercesc;
 
 
class cPeaksList;
 
 
struct cImzMLItem {
 
    int x;
 
 
    int y;
 
 
    long long unsigned mzstart;
 
 
    long long unsigned mzlength;
 
 
    long long unsigned intensitystart;
 
 
    long long unsigned intensitylength;
 
 
    string title;
 
 
    cImzMLItem() {
        x = 0;
        y = 0;
        mzstart = 0;
        mzlength = 0;
        intensitystart = 0;
        intensitylength = 0;
        title = "";
    }
 
};
 
 
 
class cImzML {
 
    XercesDOMParser* parser;
    DOMDocument* document;
 
    bool profilespectra;
    bool use_64bit_float_mz_precision;
    bool use_64bit_float_intensity_precision;
    vector<cImzMLItem> imzmlitems;
 
public:
    
 
    cImzML();
    
 
    ~cImzML();
 
 
    int parse(string& filename, int& defaultmaxx, int& defaultmaxy, int& defaultpixelsizex, int& defaultpixelsizey, eVendorType& vendor);
 
 
    void updateRawDataToPeakList(vector<cPeaksList>& peaklists, string& convertedibdfilename);
 
 
    vector<cImzMLItem>& getItems();
 
 
    bool hasProfileSpectra();
 
 
    bool use64BitMzPrecision();
 
 
    bool use64BitIntensityPrecision();
 
 
    void write(string& filename);
 
};
 
 
#endif