cDeNovoGraphNode Class Reference

The class representing a node in the de novo graph. More...

#include <cDeNovoGraphNode.h>

Public Member Functions
	cDeNovoGraphNode ()
	The constructor.
void	clear ()
	Clear the class.
double	getMZRatio ()
	Get the mz ratio of the node. More...
void	setMZRatio (double mzratio)
	Set the mz ratio of the node. More...
double	getIntensity ()
	Get the intensity of the node. More...
void	setIntensity (double intensity)
	Set the intensity of the node. More...
void	insertTempEdge (cEdge &e)
	Insert an edge into a temporary unordered set. More...
void	insertEdge (cEdge &e)
	Insert an edge into a vector of edges. More...
void	sortEdgesByPPMError ()
	Sort a vector of edges by ppm error.
void	sortEdgesByTargetNodeIntensity ()
	Sort a vector of edges by target node intensity.
void	createVectorOfEdges ()
	Create a vector of edges from an unordered set of temporary edges.
int	size ()
	Get the number of edges. More...
cEdge &	operator[] (int position)
	Overloaded operator []. More...
void	removeEdge (int position)
	Remove an edge. More...
void	clearEdges ()
	Clear edges.
void	addIonAnnotation (eFragmentIonType iontype)
	Add ion annotation. More...
bool	checkIonAnnotation (eFragmentIonType iontype)
	Check ion annotation. More...

Detailed Description

The class representing a node in the de novo graph.

Member Function Documentation

addIonAnnotation()

void cDeNovoGraphNode::addIonAnnotation

(

eFragmentIonType

iontype

)

Add ion annotation.

Parameters

iontype

type of fragment ion

checkIonAnnotation()

bool cDeNovoGraphNode::checkIonAnnotation

(

eFragmentIonType

iontype

)

Check ion annotation.

Parameters

iontype

type of fragment ion

Return values

bool	true when the ion type was assigned to the node

getIntensity()

double cDeNovoGraphNode::getIntensity

(

)

Get the intensity of the node.

Return values

double

intensity

getMZRatio()

double cDeNovoGraphNode::getMZRatio

(

)

Get the mz ratio of the node.

Return values

double

mz ratio

insertEdge()

void cDeNovoGraphNode::insertEdge

(

cEdge &

e

)

Insert an edge into a vector of edges.

Parameters

e	reference to an edge

insertTempEdge()

void cDeNovoGraphNode::insertTempEdge

(

cEdge &

e

)

Insert an edge into a temporary unordered set.

Parameters

e	reference to an edge

operator[]()

cEdge & cDeNovoGraphNode::operator[]

(

int

position

)

Overloaded operator [].

Parameters

position

position of an edge

Return values

edge	reference to an edge

removeEdge()

void cDeNovoGraphNode::removeEdge

(

int

position

)

Remove an edge.

Parameters

position

position of removed edge

setIntensity()

void cDeNovoGraphNode::setIntensity

(

double

intensity

)

Set the intensity of the node.

Parameters

intensity

intensity

setMZRatio()

void cDeNovoGraphNode::setMZRatio

(

double

mzratio

)

Set the mz ratio of the node.

Parameters

mzratio

mz ratio

size()

int cDeNovoGraphNode::size

(

)

Get the number of edges.

Return values

int	number of edges

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The documentation for this class was generated from the following files:

• core/cDeNovoGraphNode.h
• core/cDeNovoGraphNode.cpp