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CycloBranch
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The class representing a series of peaklists. More...
#include <cPeakListSeries.h>
Public Member Functions | |
| cPeakListSeries () | |
| The constructor. | |
| cPeakListSeries (const cPeakListSeries &peaklistseries) | |
| The copy constructor. More... | |
| cPeakListSeries & | operator= (const cPeakListSeries &peaklistseries) |
| Overloaded operator=. More... | |
| cPeaksList & | operator[] (int position) |
| Overloaded operator []. More... | |
| void | clear () |
| Clear the peaklist series. | |
| void | resize (int size) |
| Resize the peaklist series. More... | |
| void | addPeakList (cPeaksList &peaklist) |
| Add a peaklist. More... | |
| void | loadFromPlainTextStream (ifstream &stream) |
| Load the series of peaklists from a plain text stream. More... | |
| void | loadFromBAFStream (ifstream &stream) |
| Load the series of peaklists from a .csv file converted from a .baf file by CompassXport. More... | |
| int | loadFromProfileApexStream (string &filename, ifstream &stream, ifstream &titlestream, double fwhm, cMainThread *os, bool &terminatecomputation) |
| Load the series of peaklists from a .csv file converted from apex data by CompassXport. More... | |
| int | loadFromMZMLStream (string &mzmlfilename, ifstream &mzmlstream, double fwhm, eModeType mode, cMainThread *os, bool &terminatecomputation) |
| Load the series of peaklists from .mzML file. More... | |
| int | loadFromIMZMLStream (string &imzmlfilename, ifstream &ibdstream, double fwhm, int &defaultmaxx, int &defaultmaxy, int &defaultpixelsizex, int &defaultpixelsizey, eVendorType &vendor, cMainThread *os, bool &terminatecomputation) |
| Load the series of peaklists from .imzML file. More... | |
| void | loadSpotList (ifstream &stream) |
| Load a spot list from a stream. More... | |
| void | loadFromMGFStream (ifstream &stream, int timeunit) |
| Load the series of peaklists from a .mgf file. More... | |
| int | size () |
| The number of peaklists in the series. More... | |
| void | store (ofstream &os) |
| Store the structure into an output stream. More... | |
| void | load (ifstream &is, int fileversionpart1, int fileversionpart2, int fileversionpart3) |
| Load the structure from an input stream. More... | |
The class representing a series of peaklists.
| cPeakListSeries::cPeakListSeries | ( | const cPeakListSeries & | peaklistseries | ) |
The copy constructor.
| peaklistseries | reference to a cPeakListSeries |
| void cPeakListSeries::addPeakList | ( | cPeaksList & | peaklist | ) |
Add a peaklist.
| peaklist | peaklist which will be added |
| void cPeakListSeries::load | ( | ifstream & | is, |
| int | fileversionpart1, | ||
| int | fileversionpart2, | ||
| int | fileversionpart3 | ||
| ) |
Load the structure from an input stream.
| is | an input stream |
| fileversionpart1 | first number of .res the file version |
| fileversionpart2 | second number of .res the file version |
| fileversionpart3 | third number of .res the file version |
| void cPeakListSeries::loadFromBAFStream | ( | ifstream & | stream | ) |
Load the series of peaklists from a .csv file converted from a .baf file by CompassXport.
| stream | source stream |
| int cPeakListSeries::loadFromIMZMLStream | ( | string & | imzmlfilename, |
| ifstream & | ibdstream, | ||
| double | fwhm, | ||
| int & | defaultmaxx, | ||
| int & | defaultmaxy, | ||
| int & | defaultpixelsizex, | ||
| int & | defaultpixelsizey, | ||
| eVendorType & | vendor, | ||
| cMainThread * | os, | ||
| bool & | terminatecomputation | ||
| ) |
Load the series of peaklists from .imzML file.
| imzmlfilename | imzML filename |
| ibdstream | ibd binary file stream |
| fwhm | FWHM |
| defaultmaxx | max count of pixel x - parsed from imzML file |
| defaultmaxy | max count of pixel y - parsed from imzML file |
| defaultpixelsizex | pixel size x - parsed from imzML file |
| defaultpixelsizey | pixel size y - parsed from imzML file |
| vendor | vendor type |
| os | pointer to the main thread of the application (output stream) |
| terminatecomputation | reference to a variable determining that the computation must be stopped |
| int | 0 = success; -1 = aborted by user, -2 = error |
| void cPeakListSeries::loadFromMGFStream | ( | ifstream & | stream, |
| int | timeunit | ||
| ) |
Load the series of peaklists from a .mgf file.
| stream | source stream |
| timeunit | rt unit |
| int cPeakListSeries::loadFromMZMLStream | ( | string & | mzmlfilename, |
| ifstream & | mzmlstream, | ||
| double | fwhm, | ||
| eModeType | mode, | ||
| cMainThread * | os, | ||
| bool & | terminatecomputation | ||
| ) |
Load the series of peaklists from .mzML file.
| mzmlfilename | mzML filename |
| mzmlstream | mzML file stream |
| fwhm | FWHM |
| mode | program mode |
| os | pointer to the main thread of the application (output stream) |
| terminatecomputation | reference to a variable determining that the computation must be stopped |
| int | 0 = success; -1 = aborted by user, -2 = error |
| void cPeakListSeries::loadFromPlainTextStream | ( | ifstream & | stream | ) |
Load the series of peaklists from a plain text stream.
| stream | source stream |
| int cPeakListSeries::loadFromProfileApexStream | ( | string & | filename, |
| ifstream & | stream, | ||
| ifstream & | titlestream, | ||
| double | fwhm, | ||
| cMainThread * | os, | ||
| bool & | terminatecomputation | ||
| ) |
Load the series of peaklists from a .csv file converted from apex data by CompassXport.
| filename | filename |
| stream | source stream |
| titlestream | title stream |
| fwhm | FWHM |
| os | pointer to the main thread of the application (output stream) |
| terminatecomputation | reference to a variable determining that the computation must be stopped |
| int | 0 = success; -1 = aborted by user, -2 = error |
| void cPeakListSeries::loadSpotList | ( | ifstream & | stream | ) |
Load a spot list from a stream.
| stream | source stream |
| cPeakListSeries & cPeakListSeries::operator= | ( | const cPeakListSeries & | peaklistseries | ) |
Overloaded operator=.
| peaklistseries | reference to a cPeakListSeries |
| cPeaksList & cPeakListSeries::operator[] | ( | int | position | ) |
Overloaded operator [].
| position | position of a peaklist |
| cPeaksList | reference to a peaklist |
| void cPeakListSeries::resize | ( | int | size | ) |
Resize the peaklist series.
| size | new size |
| int cPeakListSeries::size | ( | ) |
The number of peaklists in the series.
| int | number of peaklists in the series |
| void cPeakListSeries::store | ( | ofstream & | os | ) |
Store the structure into an output stream.
| os | an output stream |