The class representing a series of peaklists. More...

#include <cPeakListSeries.h>

Public Member Functions
	cPeakListSeries ()
	The constructor.

	cPeakListSeries (const cPeakListSeries &peaklistseries)
	The copy constructor. More...

cPeakListSeries &	operator= (const cPeakListSeries &peaklistseries)
	Overloaded operator=. More...

cPeaksList &	operator[] (int position)
	Overloaded operator []. More...

void	clear ()
	Clear the peaklist series.

void	resize (int size)
	Resize the peaklist series. More...

void	addPeakList (cPeaksList &peaklist)
	Add a peaklist. More...

void	loadFromPlainTextStream (ifstream &stream)
	Load the series of peaklists from a plain text stream. More...

void	loadFromBAFStream (ifstream &stream)
	Load the series of peaklists from a .csv file converted from a .baf file by CompassXport. More...

int	loadFromProfileApexStream (string &filename, ifstream &stream, ifstream &titlestream, double fwhm, cMainThread *os, bool &terminatecomputation)
	Load the series of peaklists from a .csv file converted from apex data by CompassXport. More...

int	loadFromMZMLStream (string &mzmlfilename, ifstream &mzmlstream, double fwhm, eModeType mode, cMainThread *os, bool &terminatecomputation)
	Load the series of peaklists from .mzML file. More...

int	loadFromIMZMLStream (string &imzmlfilename, ifstream &ibdstream, double fwhm, int &defaultmaxx, int &defaultmaxy, int &defaultpixelsizex, int &defaultpixelsizey, eVendorType &vendor, cMainThread *os, bool &terminatecomputation)
	Load the series of peaklists from .imzML file. More...

void	loadSpotList (ifstream &stream)
	Load a spot list from a stream. More...

void	loadFromMGFStream (ifstream &stream, int timeunit)
	Load the series of peaklists from a .mgf file. More...

int	size ()
	The number of peaklists in the series. More...

void	store (ofstream &os)
	Store the structure into an output stream. More...

void	load (ifstream &is, int fileversionpart1, int fileversionpart2, int fileversionpart3)
	Load the structure from an input stream. More...

Detailed Description

The class representing a series of peaklists.

Constructor & Destructor Documentation

◆ cPeakListSeries()

cPeakListSeries::cPeakListSeries ( const cPeakListSeries & peaklistseries )

The copy constructor.

Parameters

peaklistseries reference to a cPeakListSeries

Member Function Documentation

◆ addPeakList()

void cPeakListSeries::addPeakList ( cPeaksList & peaklist )

Add a peaklist.

Parameters

peaklist peaklist which will be added

◆ load()

void cPeakListSeries::load	(	ifstream &	is,
		int	fileversionpart1,
		int	fileversionpart2,
		int	fileversionpart3
	)

Load the structure from an input stream.

Parameters

is	an input stream
fileversionpart1	first number of .res the file version
fileversionpart2	second number of .res the file version
fileversionpart3	third number of .res the file version

◆ loadFromBAFStream()

void cPeakListSeries::loadFromBAFStream ( ifstream & stream )

Load the series of peaklists from a .csv file converted from a .baf file by CompassXport.

Parameters

stream source stream

◆ loadFromIMZMLStream()

int cPeakListSeries::loadFromIMZMLStream	(	string &	imzmlfilename,
		ifstream &	ibdstream,
		double	fwhm,
		int &	defaultmaxx,
		int &	defaultmaxy,
		int &	defaultpixelsizex,
		int &	defaultpixelsizey,
		eVendorType &	vendor,
		cMainThread *	os,
		bool &	terminatecomputation
	)

Load the series of peaklists from .imzML file.

Parameters

imzmlfilename	imzML filename
ibdstream	ibd binary file stream
fwhm	FWHM
defaultmaxx	max count of pixel x - parsed from imzML file
defaultmaxy	max count of pixel y - parsed from imzML file
defaultpixelsizex	pixel size x - parsed from imzML file
defaultpixelsizey	pixel size y - parsed from imzML file
vendor	vendor type
os	pointer to the main thread of the application (output stream)
terminatecomputation	reference to a variable determining that the computation must be stopped

Return values

int	0 = success; -1 = aborted by user, -2 = error

◆ loadFromMGFStream()

void cPeakListSeries::loadFromMGFStream	(	ifstream &	stream,
		int	timeunit
	)

Load the series of peaklists from a .mgf file.

Parameters

stream	source stream
timeunit	rt unit

◆ loadFromMZMLStream()

int cPeakListSeries::loadFromMZMLStream	(	string &	mzmlfilename,
		ifstream &	mzmlstream,
		double	fwhm,
		eModeType	mode,
		cMainThread *	os,
		bool &	terminatecomputation
	)

Load the series of peaklists from .mzML file.

Parameters

mzmlfilename	mzML filename
mzmlstream	mzML file stream
fwhm	FWHM
mode	program mode
os	pointer to the main thread of the application (output stream)
terminatecomputation	reference to a variable determining that the computation must be stopped

Return values

int	0 = success; -1 = aborted by user, -2 = error

◆ loadFromPlainTextStream()

void cPeakListSeries::loadFromPlainTextStream ( ifstream & stream )

Load the series of peaklists from a plain text stream.

Parameters

stream source stream

◆ loadFromProfileApexStream()

int cPeakListSeries::loadFromProfileApexStream	(	string &	filename,
		ifstream &	stream,
		ifstream &	titlestream,
		double	fwhm,
		cMainThread *	os,
		bool &	terminatecomputation
	)

Load the series of peaklists from a .csv file converted from apex data by CompassXport.

Parameters

filename	filename
stream	source stream
titlestream	title stream
fwhm	FWHM
os	pointer to the main thread of the application (output stream)
terminatecomputation	reference to a variable determining that the computation must be stopped

Return values

int	0 = success; -1 = aborted by user, -2 = error

◆ loadSpotList()

void cPeakListSeries::loadSpotList ( ifstream & stream )

Load a spot list from a stream.

Parameters

stream source stream

◆ operator=()

cPeakListSeries & cPeakListSeries::operator= ( const cPeakListSeries & peaklistseries )

Overloaded operator=.

Parameters

peaklistseries reference to a cPeakListSeries

◆ operator[]()

cPeaksList & cPeakListSeries::operator[] ( int position )

Overloaded operator [].

Parameters

position position of a peaklist

Return values

cPeaksList reference to a peaklist

◆ resize()

void cPeakListSeries::resize ( int size )

Resize the peaklist series.

Parameters

size new size

◆ size()

int cPeakListSeries::size ( )

The number of peaklists in the series.

Return values

int	number of peaklists in the series

◆ store()

void cPeakListSeries::store ( ofstream & os )

Store the structure into an output stream.

Parameters

os	an output stream

The documentation for this class was generated from the following files:

core/cPeakListSeries.h
core/cPeakListSeries.cpp

Public Member Functions

Detailed Description

Constructor & Destructor Documentation

◆ cPeakListSeries()

Member Function Documentation

◆ addPeakList()

◆ load()

◆ loadFromBAFStream()

◆ loadFromIMZMLStream()

◆ loadFromMGFStream()

◆ loadFromMZMLStream()

◆ loadFromPlainTextStream()

◆ loadFromProfileApexStream()

◆ loadSpotList()

◆ operator=()

◆ operator[]()

◆ resize()

◆ size()

◆ store()