cGraphReaderThread.h

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#ifndef _CGRAPHREADERTHREAD_H
#define _CGRAPHREADERTHREAD_H
 
#include <iostream>
#include <string>
#include <vector>
#include <algorithm>
#include <QThread>
 
#include "core/cParameters.h"
#include "core/cCandidateSet.h"
#include "core/cDeNovoGraphNode.h"
#include "core/cBricksDatabase.h"
 
 
using namespace std;
 
 
class cMainThread;
 
 
class cGraphReaderThread : public QThread {
 
    Q_OBJECT
    
private:
 
    vector<cDeNovoGraphNode>* graph;
    cBricksDatabase* bricksdatabasewithcombinations;
    cCandidateSet* candidates;
    cParameters* parameters;
    cMainThread* os;
    int lastsystemnode;
    long long unsigned* count;
    int scanmode;
    bool* terminatecomputation;
 
    int getCandidatesIter(eFragmentIonType startiontype, cCandidateSet* candidates, int nodeid, vector<string>& composition, double precursormass, int startmodifID, int endmodifID, int middlemodifID, int middlepos, vector<nodeEdge>& perspectivepath, double cummass, string& startsummary, bool* terminatecomputation);
 
    double getCandidatePrecursorMass(string& startsummary, vector<nodeEdge>& perspectivepath);
 
    cSummaryFormula getCandidateSummaryFormula(string& startsummary, vector<nodeEdge>& perspectivepath);
 
public:
 
 
    cGraphReaderThread();
 
 
    void initialize(vector<cDeNovoGraphNode>& graph, cBricksDatabase& bricksdatabasewithcombinations, cCandidateSet& candidates, cParameters* parameters, cMainThread* os, int lastsystemnode, long long unsigned& count, int scanmode, bool& terminatecomputation);
 
 
protected:
 
 
    void run();
 
};
 
 
#endif