cGraphReaderThread Class Reference

The class representing a thread which scans the de novo graph for peptide sequence candidates. More...

#include <cGraphReaderThread.h>

Inheritance diagram for cGraphReaderThread:

Public Member Functions
	cGraphReaderThread ()
	The constructor.
void	initialize (vector< cDeNovoGraphNode > &graph, cBricksDatabase &bricksdatabasewithcombinations, cCandidateSet &candidates, cParameters *parameters, cMainThread *os, int lastsystemnode, long long unsigned &count, int scanmode, bool &terminatecomputation)
	Initialize the graph reader. More...

Protected Member Functions
void	run ()
	The main method of the thread.

Detailed Description

The class representing a thread which scans the de novo graph for peptide sequence candidates.

Member Function Documentation

initialize()

void cGraphReaderThread::initialize	(	vector< cDeNovoGraphNode > &	graph,
		cBricksDatabase &	bricksdatabasewithcombinations,
		cCandidateSet &	candidates,
		cParameters *	parameters,
		cMainThread *	os,
		int	lastsystemnode,
		long long unsigned &	count,
		int	scanmode,
		bool &	terminatecomputation
	)

Initialize the graph reader.

Parameters

graph	reference to the de novo graph
bricksdatabasewithcombinations	reference to a database of bricks with combinations of bricks
candidates	reference to a set where peptide sequence candidates will be stored
parameters	pointer to program parameters
os	pointer to the main thread of the application
lastsystemnode	position of the last system node in the de novo graph
count	an output number of peptide sequence candidates
scanmode	0 = get candidates; 1 = calculate the number of peptide sequence candidates
terminatecomputation	reference to a variable determining that the thread must be stopped

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The documentation for this class was generated from the following files:

• parallel/cGraphReaderThread.h
• parallel/cGraphReaderThread.cpp