cSpectrumComparatorThreadMS2.h

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#ifndef _CSPECTRUMCOMPARATORTHREADMS2_H
#define _CSPECTRUMCOMPARATORTHREADMS2_H
 
#include <QRunnable>
#include <QObject>
 
#include "core/cTheoreticalSpectrum.h"
 
 
class cTheoreticalSpectrumList;
 
bool comparePaths(vector<nodeEdge>& a, vector<nodeEdge>& b);
 
 
bool compareBandAllIonsDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareYBandAllIonsDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareYandAllIonsDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareSumOfRelIntDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareNumberOfMatchedPeaksDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareWeightedRatioDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
bool compareCosineSimilarityDesc(const cTheoreticalSpectrum& a, const cTheoreticalSpectrum& b);
 
 
class cSpectrumComparatorThreadMS2 : public QObject, public QRunnable {
 
    Q_OBJECT
    
private:
 
    cCandidate candidate;
    cPeaksList peaklist;
    cTheoreticalSpectrumList* theoreticalspectrumlist;
    cParameters* parameters;
    regex* rxsequencetag;
    regex* rxsearchedsequence;
    double lastavailableworstscore;
    bool* terminatecomputation;
    cBricksDatabase* bricksdatabasewithcombinations;
 
public:
 
 
    void initialize(cCandidate& candidate, cPeaksList& peaklist, cBricksDatabase* bricksdatabasewithcombinations, cTheoreticalSpectrumList* theoreticalspectrumlist, cParameters* parameters, regex* rxsequencetag, regex* rxsearchedsequence, double currentworstscore, bool* terminatecomputation);
 
 
protected:
 
 
    void run();
 
};
 
 
#endif