The class representing a thread for comparison of a theoretical spectrum with a peak list (MS2 level). More...

Inheritance diagram for cSpectrumComparatorThreadMS2:

Public Member Functions
void	initialize (cCandidate &candidate, cPeaksList &peaklist, cBricksDatabase bricksdatabasewithcombinations, cTheoreticalSpectrumList theoreticalspectrumlist, cParameters parameters, regex rxsequencetag, regex rxsearchedsequence, double currentworstscore, bool terminatecomputation)
	Initialize the spectrum comparator. More...

Detailed Description

The class representing a thread for comparison of a theoretical spectrum with a peak list (MS2 level).

Member Function Documentation

void cSpectrumComparatorThreadMS2::initialize	(	cCandidate &	candidate,
		cPeaksList &	peaklist,
		cBricksDatabase *	bricksdatabasewithcombinations,
		cTheoreticalSpectrumList *	theoreticalspectrumlist,
		cParameters *	parameters,
		regex *	rxsequencetag,
		regex *	rxsearchedsequence,
		double	currentworstscore,
		bool *	terminatecomputation
	)

Initialize the spectrum comparator.

Parameters

candidate	reference to a peptide sequence candidate
peaklist	reference to a peak list
bricksdatabasewithcombinations	pointer to a database of bricks with combinations of bricks
theoreticalspectrumlist	pointer to the result list of theoretical spectra
parameters	pointer to program parameters
rxsequencetag	pointer to a regular expression of a sequence tag
rxsearchedsequence	pointer to a regular expression of a searched sequence
currentworstscore	worst score in the resulting set of theoretical spectra
terminatecomputation	reference to a variable determining that the thread must be stopped

The documentation for this class was generated from the following files: