cSpectrumComparatorThreadMS2.h File Reference

The thread for comparison of a theoretical spectrum with a peak list (MS2 level). More...

#include <QRunnable>
#include <QObject>
#include "core/cTheoreticalSpectrum.h"

Go to the source code of this file.

Classes
class	cSpectrumComparatorThreadMS2
	The class representing a thread for comparison of a theoretical spectrum with a peak list (MS2 level). More...

Functions
bool	comparePaths (vector< nodeEdge > &a, vector< nodeEdge > &b)
	Compare two paths of a peptide sequence candidate as a string. More...
bool	compareBandAllIonsDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (number of b-ions and all ions secondly). More...
bool	compareYBandAllIonsDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (number of b-ions + y-ions and all ions as a secondary score). More...
bool	compareYandAllIonsDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (number of y-ions and all ions as a secondary score). More...
bool	compareSumOfRelIntDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (sum of relative intensities of matched peaks). More...
bool	compareNumberOfMatchedPeaksDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (number of matched peaks). More...
bool	compareWeightedRatioDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (weighted ratio of matched peaks). More...
bool	compareCosineSimilarityDesc (const cTheoreticalSpectrum &a, const cTheoreticalSpectrum &b)
	Compare scores of two theoretical spectra (cosine similarity). More...

Detailed Description

The thread for comparison of a theoretical spectrum with a peak list (MS2 level).

Function Documentation

compareBandAllIonsDesc()

bool compareBandAllIonsDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (number of b-ions and all ions secondly).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

compareCosineSimilarityDesc()

bool compareCosineSimilarityDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (cosine similarity).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

compareNumberOfMatchedPeaksDesc()

bool compareNumberOfMatchedPeaksDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (number of matched peaks).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

comparePaths()

bool comparePaths	(	vector< nodeEdge > &	a,
		vector< nodeEdge > &	b
	)

Compare two paths of a peptide sequence candidate as a string.

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the path of a is smaller than the path of b

compareSumOfRelIntDesc()

bool compareSumOfRelIntDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (sum of relative intensities of matched peaks).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

compareWeightedRatioDesc()

bool compareWeightedRatioDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (weighted ratio of matched peaks).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

compareYandAllIonsDesc()

bool compareYandAllIonsDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (number of y-ions and all ions as a secondary score).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b

compareYBandAllIonsDesc()

bool compareYBandAllIonsDesc	(	const cTheoreticalSpectrum &	a,
		const cTheoreticalSpectrum &	b
	)

Compare scores of two theoretical spectra (number of b-ions + y-ions and all ions as a secondary score).

Parameters

a	first theoretical spectrum
b	second theoretical spectrum

Return values

bool	true if the score of a is greater than the score of b